YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7160817
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	500	0.59
Transmembrane Helix	501	517	0.33
Cytoplasmic	518	523	0.69
Transmembrane Helix	524	546	0.88
Non-Cytoplasmic	547	558	0.62
Transmembrane Helix	559	581	0.86
Cytoplasmic	582	593	0.71
Transmembrane Helix	594	615	0.48
Non-Cytoplasmic	616	633	0.67
Transmembrane Helix	634	658	0.86
Cytoplasmic	659	667	0.59
Transmembrane Helix	668	689	0.91
Non-Cytoplasmic	690	772	0.69
Transmembrane Helix	773	795	0.87
Cytoplasmic	796	1191	0.71
Transmembrane Helix	1192	1212	0.86
Non-Cytoplasmic	1213	1224	0.67
Transmembrane Helix	1225	1247	0.84
Cytoplasmic	1248	1267	0.78
Transmembrane Helix	1268	1292	0.84
Non-Cytoplasmic	1293	1312	0.77
Transmembrane Helix	1313	1334	0.91
Cytoplasmic	1335	1344	0.68
Transmembrane Helix	1345	1366	0.86
Non-Cytoplasmic	1367	1466	0.90
Transmembrane Helix	1467	1486	0.96
Cytoplasmic	1487	1498	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLGSISPN LPRSQSVVSH NLPQAHGLDE NDDIYHNHST TAQPGASEKD KSEDGETLHE  60
   61 NEPDGEARVT LLARQLTRHS TRLTAKSTLE NPFFLDDSDS TLNPNSPNFR VRDWMKMLLE 120
  121 IRSRDPERYP DRTAGIAFKN LSVHGFGSPT DYQKDVMNVL LEIGTIARRL AGMKMPKIQI 180
  181 LRDFEGLVRS GEMLVVLGRP GSGCSTFLKT IAGEMNGIQV SDDAVLNYQG ISSKNMQNSF 240
  241 RGEAIYTAEN DIHFPQLSVG DTLMFSALAR APRNRLEGVS RKQYAEHMRD VVMAMLGLSH 300
  301 TINTRVGNDF IRGVSGGERK RVSIAEATLS QAPLQCWDNS TRGLDSANAL EFCKNLALMS 360
  361 KYTGSTACVA IYQASQSAYD VFDKVTVLYE GRQIYFGNTK DAKKFFVDMG FECPERQTTA 420
  421 DFLTSLTSPA ERLVRPGYEG RVPCTPDEFA AAWKRSEERA KLMAEIEEYE RQYPIGGPSY 480
  481 DAFVDARKAM QSKRQRVNSP YTISIWQQVS LCVVRGFQRL RGDFSLTTTS LIGNFMMALI 540
  541 IGSVFFDLPD DTSSFYYRGA LLFFAVLLNA FSSALEILTL YSQRPIVEKQ SRYAFYHPFA 600
  601 EAVASMICDT PYKLINSFTF NVPLYLMTNL RRDAAAFFTF WIFSVVTTFT MSMIFRTIAS 660
  661 TSRSLSQALV PAAMLILGMV IYTGFTIPTQ NMLGWSRWMN YINPIAYSFE SFMVNEFDGR 720
  721 QFECVSIIPS GDEYNNVSMQ YRICSTVGAE SGSRIVDGGQ YLELSYQYTK SHLWRNMGIL 780
  781 IGFMVFFAFT YLLGTEYISE QKAKGEVLLF RRGRQPDLST TEADPENPIQ PSNAPKTEES 840
  841 APQNTARIQR QTAIFHWEDV CYDIKIKGQP RRILDNVDGW VKPGTCTALM GVSGAGKTTL 900
  901 LDVLATRVTM GVVSGSMLVD GRLRDQSFQR KTGYVQQQDL HLATSTVREA LRFSAILRQP 960
  961 AHLSRQEKLD YVEEVIKLLG MEAYADAIVG VPGQGLNVEQ RKRLTIGVEL AAKPQLLLFL1020
 1021 DEPTSGLDSQ TSWSILDLID TLTQHGQAIL CTIHQPSAML FQRFDRLLLL ASGGKTIYFG1080
 1081 EIGPNSSTLS NYFVRNGSHG LPPGDNPAEW MLEVIGAAPG SNTEIDWVKT WRESPEYAKV1140
 1141 REHLAELRAT LSAKPADSSD PSALSEFAAP FSVQLWECLV RVFAQYYRTP TYIWSKAALC1200
 1201 ALTALYIGFS FFNAPTSIQG LQNQMFSVFM LMTIFGNLVQ QIMPNFVTQR SLYEARERPS1260
 1261 KAYSWKAFMA ANIIVELPWN SLMAALIFFC WYYPIGLYNN AKPTDAVTER GGLMFLLIWT1320
 1321 FLLFTSTFAH MIIAGIELAE TGGNVAQLLF SLCLIFCGVL STPDAMPGFW IFMYRVSPFT1380
 1381 YLVSAMLSTG LSGTDVECEP VEYLTFAPPN NQTCGDYMRA YIDEVQSGYL LDPSATDQCS1440
 1441 FCSMDKTDTF LLSVGSTFDE AWRNFGLMWA YILFNIVGAV FIYWLARVPK GKKMAGTA