YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3901117
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.87
Transmembrane Helix	104	119	0.48
Non-Cytoplasmic	120	145	0.57
Transmembrane Helix	146	165	0.70
Cytoplasmic	166	178	0.64
Transmembrane Helix	179	197	0.95
Non-Cytoplasmic	198	203	0.68
Transmembrane Helix	204	225	0.82
Cytoplasmic	226	235	0.72
Transmembrane Helix	236	256	0.82
Non-Cytoplasmic	257	278	0.90
Transmembrane Helix	279	300	0.92
Cytoplasmic	301	365	0.99
Transmembrane Helix	366	387	0.92
Non-Cytoplasmic	388	397	0.88
Transmembrane Helix	398	419	0.92
Cytoplasmic	420	427	0.86
Transmembrane Helix	428	448	0.93
Non-Cytoplasmic	449	458	0.80
Transmembrane Helix	459	481	0.91
Cytoplasmic	482	494	0.89
Transmembrane Helix	495	516	0.84
Non-Cytoplasmic	517	526	0.74
Transmembrane Helix	527	544	0.94
Cytoplasmic	545	614	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGLSSLINR KKDRNDSHLD EIENGVNATE FNSIEMEEQG KKSDFDLSHL EYGPGSLIPN  60
   61 DNNEEVPDLL DEAMQDAKEA DESERGMPLM TALKTYPKAA AWSLLVSTTL IQEGYDTAIL 120
  121 GAFYALPVFQ KKYGSLNSNT GDYEISVSWQ IGLCLCYMAG EIVGLQMTGP SVDYMGNRYT 180
  181 LIMALFFLAA FIFILYFCKS LGMIAVGQAL CGMPWGCFQC LTVSYASEIC PLALRYYLTT 240
  241 YSNLCWAFGQ LFAAGIMKNS QNKYPNSDLG YKLPFALQWI WPLPLAVGIF FAPESPWWLV 300
  301 KKGRIDQARR SLERTLSGKG PEKELLVSME LDKIKTTIEK EQKMSDEGTY WDCVKDGINR 360
  361 RRTRIACLCW IGQCSCGASL IGYSTYFYEK AGVSTDTAFT FSIIQYCLGI AATFVSWWAS 420
  421 KYCGRFDLYA FGLAFQAIMF FIIGGLGCSD THGAKMGSGA LLMVVAFFYN LGIAPVVFCL 480
  481 VSEIPSSRLR TKTIILARNA YNVIQVVVTV LIMYQLNSEK WNWGAKSGFF WGGFCLATLA 540
  541 WAVVDLPETA GRTFIEINEL FRLGVPARKF KSTKVDPFAA AKAAAAEINV KDPKEDLETS 600
  601 VVDEGRSTPS VVNK