YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2440082
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.97
Transmembrane Helix	17	38	0.91
Non-Cytoplasmic	39	63	0.91
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	93	0.86
Transmembrane Helix	94	113	0.94
Non-Cytoplasmic	114	118	0.76
Transmembrane Helix	119	140	0.90
Cytoplasmic	141	152	0.81
Transmembrane Helix	153	172	0.89
Non-Cytoplasmic	173	187	0.80
Transmembrane Helix	188	206	0.88
Cytoplasmic	207	274	0.95
Transmembrane Helix	275	297	0.89
Non-Cytoplasmic	298	311	0.86
Transmembrane Helix	312	333	0.89
Cytoplasmic	334	340	0.85
Transmembrane Helix	341	363	0.92
Non-Cytoplasmic	364	370	0.87
Transmembrane Helix	371	394	0.93
Cytoplasmic	395	408	0.83
Transmembrane Helix	409	430	0.82
Non-Cytoplasmic	431	444	0.77
Transmembrane Helix	445	465	0.76
Cytoplasmic	466	716	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEIFLAPP AKQSKKISIL VGMFVAVGGF LFGYDTGLIN NISEMPYVNQ KFAPNKNHFT  60
   61 TPQISILVSF LSLGTFIGAL LAPLISDSYG RKTTMIFSTF VVFMIGNSLQ VAAGSMTILV 120
  121 VGRVLSGMSV GLISAAVPLY QSEAAQKSVR GAIISCYQWA ITWGLLVASA VSQGTYKRMD 180
  181 ASSYQIPIGL QYIWSFLLGV GILFLPESPR YYVFKDRLDK AAKSLSFLRG VPEDDSGLLE 240
  241 ELVEIKATYD YEMSFGKISY LDCFRSTRSR TKQRLRMLTG IALQAFQQVS GINFIFYYGV 300
  301 DFFNKSGVSE SYLVSFVTYA VNVAFNIPGL FLVEYIGRRK LLLMGGILMT ISNFIIAIVG 360
  361 LATDSMVANK VMIAFICLFI ASFSATWGGG VWVISAELYP LGVRAKCTAI CAASNWLINF 420
  421 ICALITPYIM HIDSSVRQTS IGTKIFFVWG SLNAVGVLVV YFTVYETNGL SLEEIDELYK 480
  481 KSSSGINSIE WNKKIKAFPD LFQRTRPNNE GDGEADDNIH TDENYNHTIS SYNGTQNNEK 540
  541 YPIQVQMPQF GVRNIEFLNT TGSSPQSDMT EPNFVDLGNG LGITTYQRGP PSVLTDSSEE 600
  601 EEEGQQQETD ETEEGKSFKH QYTDARNKNR GERGSFNSNS STSGTTRSSS HKASVQRMEE 660
  661 INLYMAQLMH RGGTEDLSRN TTDNTHQPIS HDIMSQWNSS SQNKGPSTQT DINSNT