YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27525865
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVFSVPV FLVVFRETLE TVIIVSVLLA FLKQTLDGPN RDVKTYKALR RQIWLGVAAG  60
   61 FLVCMIVAGA LIGVFYTVGS NAWENNENYY EGAFCLFAAA IITVMGAALL RIGKMQAKWR 120
  121 VKLAKAIESP IKTRARGCVA HWLEKYAMFV LPFITVLREG IEAVVFVAGV TFSAPAYAVP 180
  181 LPVVVGLLVG GFIGWLLYKG GSTAKLQIFL VASTCILYLV SAGLFSRGVW HLQAQKWNNA 240
  241 IGGDASETGS GPGSYDIDQS VWHVNCCSPT ATNDGGWGVF NAILGWQNSA TYGSVISYNL 300
  301 YWLFVMAGFA TMRFKETKGH YPFFKAKATA PSVADSQSSS SQHEIGDKAP AVKVAVPRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.56
Transmembrane Helix	13	32	0.57
Cytoplasmic	33	52	0.94
Transmembrane Helix	53	76	0.93
Non-Cytoplasmic	77	91	0.88
Transmembrane Helix	92	113	0.92
Cytoplasmic	114	145	0.91
Transmembrane Helix	146	168	0.77
Non-Cytoplasmic	169	175	0.73
Transmembrane Helix	176	198	0.92
Cytoplasmic	199	207	0.83
Transmembrane Helix	208	229	0.90
Non-Cytoplasmic	230	289	0.94
Transmembrane Helix	290	310	0.83
Cytoplasmic	311	359	0.95