YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16945392
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDPFPFPPI PALAKATQPW ADRLSLPTLP LHIHEVIGAA ALYTFVHVVV SPIVSNLFFS  60
   61 KYYPKHSRSK KANWDTHVVS LVQSTLINVL ALWVMYADKE RAAMDWEQRI WGYTGASGMI 120
  121 QALACGYFVW DLGITLLNFD IFGFGLLAHA VSALVVYSFG FRPFLNYYST TFILYELSTP 180
  181 FLNIHWFFDK LNMTGSRAQL YNGIALLVTF FGCRLIWGTW QSIEVYKDMW KAVHRAPTPE 240
  241 YIQSYYNTTS STIDAENVML FAAKPEPIPV WLALLYVASN LTLNTLNWYW FFKMISAVRK 300
  301 RFVPQDETKE EKSDVAAGKG EEKGAKSTAT EQAKRPVIVN RHRRQNSIED LIPDNEELRE 360
  361 GTIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.77
Transmembrane Helix	36	59	0.81
Cytoplasmic	60	75	0.76
Transmembrane Helix	76	97	0.86
Non-Cytoplasmic	98	109	0.80
Transmembrane Helix	110	130	0.93
Cytoplasmic	131	138	0.62
Transmembrane Helix	139	161	0.87
Non-Cytoplasmic	162	167	0.69
Transmembrane Helix	168	188	0.80
Cytoplasmic	189	199	0.85
Transmembrane Helix	200	220	0.93
Non-Cytoplasmic	221	269	0.94
Transmembrane Helix	270	291	0.95
Cytoplasmic	292	364	0.97