YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16945385
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILQIPYRE GRDGFWGEQT STLNWCEEDY NITYYCAELV NTLTNLMFMW LGVKGLRNVL  60
   61 EFKHSPIFIL AYVGYLVVGL GSMAFHATLK YEMQLADELP MIYTVFIMCY ATFSYKRSPR 120
  121 TQLLIASIMV GLGIFITVYY LYAKNPVFHQ VAFALITATT IFRGFYVMEY QLRPQLRERN 180
  181 PTACSRIMRE MWTLALVSII TFVGGFFIWN MDNIFCRHLT TAKNQLQLPW SIVLEGHGWW 240
  241 HILTGLGAYE MILWRIWLVR CLSGEEEKFM LDWRPWRSIP QVVPRTHKGA TKSS

Type	Start	End	Confidence
Cytoplasmic	1	66	0.76
Transmembrane Helix	67	87	0.95
Non-Cytoplasmic	88	94	0.80
Transmembrane Helix	95	114	0.88
Cytoplasmic	115	122	0.83
Transmembrane Helix	123	143	0.94
Non-Cytoplasmic	144	147	0.90
Transmembrane Helix	148	167	0.93
Cytoplasmic	168	190	0.87
Transmembrane Helix	191	209	0.97
Non-Cytoplasmic	210	237	0.94
Transmembrane Helix	238	258	0.93
Cytoplasmic	259	294	0.98