YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|435166, gi\|542220
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMADESFDLE SLGSDEIFEG VNLDELEQQA QTQVQAQSSQ VVVPSEKQKQ NLNLPNSYTN  60
   61 SSQKVRESTV NSQASLSSND LRTELLIKSG ENAILRANLL KQSEANNAAL ESLNNSIKQK 120
  121 QDEYQRKLEE LKKEIEYAKT KSLFHEREAQ DAIETMKKNE KRCKRNSPIM KKSHEEDGDN 180
  181 KLLSSSDQLA KSTKHAAKNS PSKKKRKTSV ATAEDASTDS VSSSIAISDA SLSLSLMKDL 240
  241 LSLQKREDLY FSSRTLAYVF GGCMHSLETI EGEEEGECLF NNLKALIYSP DLSMDSSNYV 300
  301 QSVVQTSSSI LNYSMKKLLY NASFAITSLF NALLILDPKS STFIFQENVV SLISGFLLKE 360
  361 YEKSNFLDSK FYVLIDFLYL YLSIARESAD DFANITKAVD PSLFESCIRV QNAPSLIKCG 420
  421 VCLIISSTTP SFCASVNLLN ADDKSQESLM QLFTTMAHIL VVTTRERINF PELNEWITLH 480
  481 RFVISFFTVF IQMSGNIGKE ILKVCNPLIV CIGLAITWYH QQLLSSMYPQ NECVEILVSL 540
  541 VRLLYILSSE DLSSKFMLAE NALQPRFVYA IACCAFGDTE QKAFGNLGEE MYFLTTELLE 600
  601 VCVSPEELEQ LYTNF

Type	Start	End	Confidence
Non-Cytoplasmic	1	476	0.84
Transmembrane Helix	477	495	0.51
Cytoplasmic	496	501	0.48
Transmembrane Helix	502	520	0.53
Non-Cytoplasmic	521	615	0.88