YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145229911
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.79
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFNAALTSA LVSSASIMGY AHAEETEKKP ETTSLAEKPT FTPTSIEAPF LEQFTDDWDS  60
   61 RWTPSHAKKE DSKSEEDWAY VGEWSVEEPT VLKGMEGDKG LVVKNVAAHH AISAKFPKKI 120
  121 DNKDKTLVVQ YEVKPQNSLV CGGAYLKLLQ DNKQLHLDEF SNASPYVIMF GPDKCGATNK 180
  181 VHFIFRHKNP KTGEYEEKHL KAPPAARTSK VTSVYTLVVN PDQTFQILID GESVKEGSLL 240
  241 EDFNPPVNPE KEIDDPKDKK PADWVDEAKI PDPEATKPED WDEEAPFEIV DEEATIPEDW 300
  301 LEDEPTSIPD PEAEKPEDWD DEEDGDWVPP TVPNPKCQDA SGCGPWSPPM KKNPDYKGKW 360
  361 SAPLIDNPAY KGPWAPRKIA NPAYFEDKTP SNFEPMGAIG FEIWTMQNDI LFDNIYVGHS 420
  421 AEDAEKLRQE TFDVKHPIEL AEEEANKPKP EEKAAEPSVS FKEDPVGHIK EKVDNFVRLS 480
  481 KQDPINAVKQ VPDVAGGLAA VLVTMILVIV GAVGASTPAP APAKKGKEAA GATKEKTGAA 540
  541 SSSSADTGKG GATKRTTRSS AE

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	493	0.99
Transmembrane Helix	494	517	0.72
Cytoplasmic	518	562	0.78