YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16930092
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHLSTCASQR EAAVMTSSMS HHHHPLHPHH WAAAFHHLPT SLLQPNGLHT SESTPCRLST  60
   61 SSKVPPAHGS ALLTATFAHA DSALRMPSTG TVAPCVPPLS TSLLSLSATV HAVAAAATAA 120
  121 AHSFPLSFAG AFPMLPSNAA AAAAVAAATA ISPPLSVSAA SSPQQTSSGT NSKPYRP

Type	Start	End	Confidence
Cytoplasmic	1	102	0.80
Transmembrane Helix	103	124	0.74
Non-Cytoplasmic	125	138	0.49
Transmembrane Helix	139	159	0.80
Cytoplasmic	160	177	0.70