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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18700282
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIQPPALVN DDPSTYSSAL WDWGDLLDFA ADERLLVDQI HFPPVLSPPL PPLIPTQTPA  60
   61 ESELDPSPEE SGSGSDRVRK RDPRLICSNF IEGMLPCSCP ELDQKLEDAE LPKKKRVRGG 120
  121 SGVARCQVPD CEADISELKG YHKRHRVCLR CATASFVVLD GENKRYCQQC GKFHLLPDFD 180
  181 EGKRSCRRKL ERHNNRRKRK PVDKGGVAAE QQQVLSQNDN SVIDVEDGKD ITCSSDQRAE 240
  241 EEPSLIFEDR HITTQGSVPF TRSINADNFV SVTGSGEAQP DEGMNDTKFE RSPSNGDNKS 300
  301 AYSTVCPTGR ISFKLYDWNP AEFPRRLRHQ IFQWLANMPV ELEGYIRPGC TILTVFIAMP 360
  361 EIMWAKLSKD PVAYLDEFIL KPGKMLFGRG SMTVYLNNMI FRLIKGGTTL KRVDVKLESP 420
  421 KLQFVYPTCF EAGKPIELVV CGQNLLQPKC RFLVSFSGKY LPHNYSVVPA PDQDGKRSCN 480
  481 NKFYKINIVN SDPSLFGPAF VEVENESGLS NFIPLIIGDA AVCSEMKLIE QKFNATLFPE 540
  541 GQEVTACSSL TCCCRDFGER QSTFSGLLLD IAWSVKVPSA ERTEQPVNRC QIKRYNRVLN 600
  601 YLIQNNSASI LGNVLHNLET LVKKMEPDSL VHCTCDCDVR LLHENMDLAS DIHRKHQSPI 660
  661 ESKVNPPSSG CCCVSSQKDI PSRILNFNKD PEAGLDCKER IQADCSPDSG GKETDPLLNK 720
  721 EVVMNVNDIG DWPRKSCIKT HSALAFRSRQ TMFLIATFAV CFAVCAVLYH PNKVTQLAVA 780
  781 IRMRLVHKI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle