YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC89_ARATH
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKAVGVSK DTAASMEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPDLEIYN  60
   61 FEPWDLPDKS IVKSDSEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSGSEVIG 120
  121 TKRTLVFHIG RAPKGERTDW IMHEYCVKGV SLDDAMVVCR VRRNKEYNSG TSQKAPKPNS 180
  181 SAEKHAKVQN GATSSGSPSD WDNLVDFYLA GESGEKLLAE MAESSENLQV DNDEDFFADI 240
  241 LRDEIINLDE AVMTGNTPNE VPTLESASME IRVLPLPNMI DKQMSSLLEE RPSQKKKGKD 300
  301 ATESLSSCFV GLYSIKSVNK ARWDVIIGVV ALIAMLFYLE

Type	Start	End	Confidence
Non-Cytoplasmic	1	320	0.57
Transmembrane Helix	321	339	0.55
Cytoplasmic	340	340	0.15