YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18700095
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVSLKIGD GTARFRRTSI CSSAVNLLML FSVVTTNLFA LYAFSSHSQA NSPLLHSSNN  60
   61 ISLVSQHLSL ILREIDSSQR KLAQMEKQML GYESIDISRP NIVPELKLFL QRHQLPLGKD 120
  121 SRTGITEMVS SVGHSCGKST DLLSQYMSYK VFDRCPDDWS LGQKLILRAC EPLPRRRCLA 180
  181 KTVQKQDLSK SPDSLWRSVS NKSVNWSGLG CKSFDCLKGK KLSKECVGCF DLGVEKDRFV 240
  241 KVKGKNDFLI DDVLGLGSGK IRIGFDISGG SGTFAARMAE KNVTVITNTL NNGAPFSEFI 300
  301 AARGLFTLFL SLDHRFPFLD NVFDLIHASS GLDVEGKAEK LEFLMFDLDR VLKPRGLFWL 360
  361 DNFYCANDEK KKELTRMIER FGYKKLKWVI GEKADAQVYL SAVLQKPVRA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	44	0.88
Non-Cytoplasmic	45	410	0.99