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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16945437
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQLLAFQKW SSQVQPTSLI PIVVSKWIFT ICIILSAVNL IYEHIRANRA MRSGSVAESF  60
   61 LDHLAAKLES LRIFGGKGWK RFLVFAALTE SKKGAEYIAL FCYFNFQLTS EKIEAFAEND 120
  121 YRQAATLSGM CFTLLIWIFS FLQLLLSGVL FVFFLWCYIP RADGGLTGFC ERKVNKRLKQ 180
  181 IVSAKINAAM AEEEEKRKKA QMKAAKKKGE DRPMTMKATL PNVGASIESR TEKLPEMPSL 240
  241 SRQDTMATLP AYTSRPSTPG GYELGSIEKR PMPPSRAGTF ATQFSGASST SLIGAAAEPA 300
  301 RQRANDAPTV PKIDIYNIPP TRTATMLSQS SYGTASQSNF EPRPLGRAAT GLSNYDAASS 360
  361 QSNFQPRPPI RTATGISHVS SVPSQQPSFQ PRPLTRAATG MSNMGPGPQS QFHPNQPRPL 420
  421 TRAATGLSNT SAGPQSQADF EPPRAGTVPP QNNFRPGMQQ PPPPRAGTAP PRNDFGPSMQ 480
  481 QPNSTFGPGY TDSPATYSTA TMPAFQLPAR APTAPPMSYS NNNYRGVEPR PIERAYTGNV 540
  541 GNQSQHDNFS AGNQVPQTNN PYGGFSGHMS NGYDQDGYGG GYGQDIYGQD NYGQQGYMYN 600
  601 GNGHDNYGHD GYGYPAQNNS QMPPRLGSAP PPQTQSGYQP YIPQRTMTAP PEGQPYYHHQ 660
  661 QKPSKSSLSS VAELPAELPV EISSEQLPPA RAGSVTSDYL EYMMDGSPSS RRTDAPPKTR 720
  721 TGSVSSQGSS GAATQETKSS GSHSRQGSAG SVSKAAGAGS NSTSSSRKGS VASSVSSSSS 780
  781 SHQRQGSVGS VASTDSSRRD PETTTAHARQ ASNDSGAATP TPASREDYLA NNTLARQASN 840
  841 DAASSDHLGG NSDNDVRPES SASNSRATAQ QQQEEDEEDD YFGINRALSQ DQQQRQQPAS 900
  901 SDREVDNDGE DFFGPTTFGN AFMRTNTAPI ALDSNSSDGD IRPIARTATA PPFLQHQQQP 960
  961 QQPQQQQQQQ HQKQDEDEDY FSQPSYQPSY QSSYQPSYNN YNNDNVNDYN QSNNTINSNN1020
 1021 NNSNYHNNNG WNEDIERGER IMDMRQNQIP HNNGGGNGEN GRYAGGGYGG QGRGGGDYDY1080
 1081 DGSGYGGSRW 

YRC Informatics Platform - Version 3.0
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