YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157071405, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLERQQA SFMSSMSAAS SKLAGTKRAL APPSPSPSVG SVASAVAAGS GTPRKAADRV  60
   61 DTPAHNIVYS QPAATGTGLN IITQVTYAIA WLRGKDEPRT YLEILGHLSG LHWSPSYQEE 120
  121 FVEAMRRTRE IQWIPDPNLS EQTWQSGTYL HRPKVPGVRN KTQLLAYLQK KTDASCVGVK 180
  181 ELKDGWPDCE KAINELEAEH KILVIRVKKE GSPRYVWLDD PSLFHEVDPE LKVMWQKVEV 240
  241 PGTDTIVQRL KAASQKPASE DPRDKMTAAP KAEKKKRAQR RTGKATNTHM EHLLKDYSHM 300
  301 KR

Type	Start	End	Confidence
Signal Peptide	1	24	0.79
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	302	0.96