YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6103281
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSDAPTPVA NELSEVSHLA EGDNASFSAG NFTVLQLPSD PSHCIDYAIP AGTLVIVDPN  60
   61 NPDNNRTVKL QAPAVFRPQC ALGGTRAPAP RPEESFPDWS EYQKYHHNDR RDPFYGSVTP 120
  121 IAYTIAASTV TAWMLLIILF LSRKPSPLFQ KIAVLITAVS LTVFLAQATD TLESQYNEGY 180
  181 QNAYELRHKI MGGWAFRILQ VITCVITWLA RLQVVIRLFD VPKINTRLAV VGSTLIFTNA 240
  241 TIWACLNFIP PWSQYVRNAK SVLPVFGALC SLLLEVFYLV VVVIYSISKR KYAYSRTSIV 300
  301 MAAISWLAMI LPMVFIVFDI AHYWIAGWSD FIRWTADAAA SVVVWEWTNV IVYQERREQR 360
  361 QSVLGRQVYR DEILDFKGDN GGGTVGGGRT KYPSRMEEDD VPFRSSPNDH HFTSNIPTSA 420
  421 GEGQSFQFFK RARLPMYSRK IWKIARGESA ASNNTHYEHA IIEEEEEESI ERNRRTPTVQ 480
  481 ENGEEDDEET YDEENDQYSQ DNHSSVHSFE SSRPSQHPVP SSGGTRAVGH THFPLPGQSE 540
  541 GANTTSPAAA AAAAEPEPEP VAGPSGGAAA HGDSDDDSDN SDDSSLASFT VIQQTGFSVD 600
  601 NQGVPEYDAD SAPPTFEPIP GFHRQDYSDA KG

Type	Start	End	Confidence
Non-Cytoplasmic	1	120	0.92
Transmembrane Helix	121	141	0.93
Cytoplasmic	142	147	0.88
Transmembrane Helix	148	169	0.86
Non-Cytoplasmic	170	192	0.90
Transmembrane Helix	193	212	0.91
Cytoplasmic	213	227	0.78
Transmembrane Helix	228	246	0.94
Non-Cytoplasmic	247	262	0.82
Transmembrane Helix	263	287	0.89
Cytoplasmic	288	301	0.81
Transmembrane Helix	302	323	0.89
Non-Cytoplasmic	324	333	0.76
Transmembrane Helix	334	353	0.62
Cytoplasmic	354	632	0.67