YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16415970
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	348	0.94
Transmembrane Helix	349	374	0.87
Cytoplasmic	375	400	0.89
Transmembrane Helix	401	423	0.82
Non-Cytoplasmic	424	430	0.88
Transmembrane Helix	431	453	0.89
Cytoplasmic	454	488	0.95
Transmembrane Helix	489	509	0.90
Non-Cytoplasmic	510	516	0.79
Transmembrane Helix	517	537	0.92
Cytoplasmic	538	546	0.81
Transmembrane Helix	547	567	0.94
Non-Cytoplasmic	568	582	0.77
Transmembrane Helix	583	608	0.84
Cytoplasmic	609	766	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSITRPLA ALASIAALVS PVFGEQKLAS QALKTCQANS GFSASLFNVV YTPESGRANV  60
   61 DIVAVSTIQG KIIFDVAISA YGYEIITAKV DPCSSGLLGL CPMTAGKIPL NFTLPVDKNA 120
  121 VAQIPSIAYN FPDIDAKVRV RINMTDGDEA GQTVACVEAE ITNGKTVDLA GVKWATAIVA 180
  181 TFALTSSAFV SGLGHHNAAS HVAANALSLF GYFQAQAMLG LTGVPLPPAV MGWTQDFQWS 240
  241 MGIIKVNFMQ DIFTWYQRAT GGTPSMLFDS LATVSVQVQK RALDVADYGA DLARRSMSYM 300
  301 PRTISEPMEQ AMKHELLKRG NIQTDTGSYV VYGIQRAAFR AHIESTNLFM TCLIFFCVLV 360
  361 VITILCVAGW KGYCELAAQK GWMKHDTFLD FRNGWFTVLK GILFRITLIG FPAMTVMCMW 420
  421 EFTQNDSPAE MVLALFFFLG MLVTLGWAAF KVIRIARRSV VMHQNPAYIL FSDPQALNKW 480
  481 GFLYVQFRAS AYYFIVPVLG YTILKGLFVA FGQNNGTAQA VGFLIIEAAA LIAATVMRPW 540
  541 MDRKTNWFNI AICVMNFINA IFLLMFTEVF NQPPLVTGVI GLILWITNSI FSLVYLLMLI 600
  601 CSTIFVFFRE NPDNRYQFMA DDRTFFMKSQ THLTTTTELD ALAATARGDK SGFKGLDLDD 660
  661 DAESMSSDSL RRQTELQPGM PAGGAGLHFT NAPPKSPVDP AMPLFPSEGR NTQGPQYGEK 720
  721 PGMNFDPRGP SPSPYGGPQG GNATLTPQYR ALNNASPWQR GAGYEH