YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14456048
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	511	0.62
Transmembrane Helix	512	535	0.89
Cytoplasmic	536	541	0.55
Transmembrane Helix	542	567	0.78
Non-Cytoplasmic	568	621	0.59
Transmembrane Helix	622	642	0.94
Cytoplasmic	643	654	0.57
Transmembrane Helix	655	676	0.91
Non-Cytoplasmic	677	759	0.69
Transmembrane Helix	760	781	0.89
Cytoplasmic	782	1179	0.68
Transmembrane Helix	1180	1200	0.91
Non-Cytoplasmic	1201	1212	0.75
Transmembrane Helix	1213	1235	0.89
Cytoplasmic	1236	1255	0.78
Transmembrane Helix	1256	1280	0.85
Non-Cytoplasmic	1281	1300	0.79
Transmembrane Helix	1301	1322	0.92
Cytoplasmic	1323	1335	0.66
Transmembrane Helix	1336	1359	0.87
Non-Cytoplasmic	1360	1451	0.86
Transmembrane Helix	1452	1473	0.91
Cytoplasmic	1474	1501	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAPFGVL PQSEAVAEKV EEVVQEKTYQ NIDHKRKDSD SESSTLDSTR EREDATIRTL  60
   61 ARQITQKSME GAYDHNINPF LGSNDPRLDP SSEKFSSRAW TKHLVHLQSR DPERYPNRTA 120
  121 GIAYKNLNAH GFGEPTDYQK TFGNYPLEII GMSKRVLGLS KPTKIQILRD FDGLIRSGEM 180
  181 LVVLGRPGSG CSTLLKTISG ETSGFFVDSN TYINYQGIPM ETMHNDFRGE CIYQAEVDVH 240
  241 FPQLTVAQTL GFAAKAKAPR NRIPGVTRDQ YAEHLRDVTM ATFGLSHTFN TKVGNDFIRG 300
  301 VSGGERKRVS IAEAAVGGSP LQCWDNSTRG LDSATALEFV KTLRNSTELS GSTAVVAIYQ 360
  361 ASQSIYDLFD KVAVLYEGRQ IYFGDINAAK TFFVNLGFDC PARQTTADFL TSITSPAERI 420
  421 VRPGFEGRTP YTPDEFAAVW QKSEDRAQLL REIDQFDAEF PIGGQALDDF KNSRKAVQAK 480
  481 GQRIKSPYTI SLPMQIRLCV ERGFQRLRGD MSLLLTGLIG QSVMALIIGS VFYNLADDTN 540
  541 SLYSRGALLF FSILMAAFQS ALEILTLYAQ RPIVEKHTKY AFYHPVAEAC ASMLCDIPNK 600
  601 VFSTIFFDLA LYFMTNLRRE PGYFFVFFLF TFLCTLTMSM YFRSIASLSR SLSEAMAPAA 660
  661 IFILAIVTYT GFAVPIRDMH PWFRWINYLD PVSYGFEALM INEFHGRKIP CSVFVPSGGN 720
  721 YGNVGADERI CSTTGAAAGA DYVDGDRYLE VNYGYNHSHL WRNLGVMIAF MFLGLFIYLS 780
  781 ASEFISAKKS KGEVLLFRRG RIPYVSKASD EEAKIDDRMT AATVTRTKTV PDAPPSIQKQ 840
  841 TAIFHWDDVH YDIKIKGEPR KLLDGVDGWV KPGTLTALMG VSGAGKTTLL DVLASRVTMG 900
  901 VVTGQMLVDG RQRDIGFQRK TGYVQQQDLH LATSTVREAL AFSAILRQPK ATPHAEKIAY 960
  961 VDEVIKVLEM EEYADAIVGV PGEGLNVEQR KRLTIGVELA AKPALLLFLD EPTSGLDSQT1020
 1021 AWSICALLRK LADNGQAILC TIHQPSAILF QEFDRLLFLA RGGRTVYFGE IGEHSKVLTN1080
 1081 YFERNGAHPC GDLANPAEWM LEVIGASPGA SNTIDWPETW KNSPERQQVK SHLAELKTTL1140
 1141 SQKQVEHDPT SLNSFAAGFG TQMQVVLVRV FQQYWRTPPY LYSKTALCLC VGLFLGFSFY1200
 1201 DTKTSLQGMQ NQLFAIFMLF TIFGNLVQQI LPHFVTQRSL YEVRERPSKT YSWKVFILSN1260
 1261 IIVELPWNTL MAVIIFVTWY YPIGLYRNAE MTNAVNERSG LMFAFIWMFL MFTSTFADFI1320
 1321 IAGIDTAENA GNIANLMFSL CLIFCGVLAS PTALPGFWIF MYRVSPFTYL VSGMMSTGLA1380
 1381 NTEVVCDSIE YLHFNPPSAK TCGEYLGPYM SAAGGYLNNP EAMTDCEFCS IKDTNVFLAG1440
 1441 VNSYYSDVWR NWGLMWVYLA FNIAGAIGMY WLVRVPKGAS QGEDNEEGAK KGWFSKKKAD1500
 1501 A