YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2131124
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFQAVSFA LGCNTLVACY AFTVLEKRSL MTSCTNALSF LFFLLTLRRI HRHWYKPYGA  60
   61 FLLIFVLTLR WFRGPIAWVV VDVVFASCNV VFFSPALSDE NWPYVSFFGV VVVIAVHIIV 120
  121 VTH

Type	Start	End	Confidence
Cytoplasmic	1	5	0.51
Transmembrane Helix	6	24	0.73
Non-Cytoplasmic	25	28	0.40
Transmembrane Helix	29	47	0.66
Cytoplasmic	48	58	0.46
Transmembrane Helix	59	93	0.64
Non-Cytoplasmic	94	101	0.57
Transmembrane Helix	102	121	0.95
Cytoplasmic	122	123	0.62