YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70992299, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	222	0.77
Transmembrane Helix	223	245	0.69
Non-Cytoplasmic	246	264	0.56
Transmembrane Helix	265	282	0.45
Cytoplasmic	283	301	0.52
Transmembrane Helix	302	324	0.89
Non-Cytoplasmic	325	334	0.51
Transmembrane Helix	335	353	0.66
Cytoplasmic	354	363	0.75
Transmembrane Helix	364	387	0.86
Non-Cytoplasmic	388	402	0.64
Transmembrane Helix	403	422	0.82
Cytoplasmic	423	440	0.69
Transmembrane Helix	441	463	0.79
Non-Cytoplasmic	464	472	0.71
Transmembrane Helix	473	495	0.75
Cytoplasmic	496	518	0.74
Transmembrane Helix	519	542	0.83
Non-Cytoplasmic	543	552	0.89
Transmembrane Helix	553	574	0.85
Cytoplasmic	575	589	0.79
Transmembrane Helix	590	610	0.88
Non-Cytoplasmic	611	616	0.70
Transmembrane Helix	617	638	0.91
Cytoplasmic	639	657	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSQGSRSL NADEQTYHGR RMSSSPLAET AIARDLENYA DNEDSINNTE DEEHSEASTV  60
   61 RAINSQPGTT PHSLVGSYQR PSFFTTVSHS TVVPHRGEPE CLSWRERDQA IEEERRLLAD 120
  121 NHVIPDKIRA GDQNGRRRRF SGLLSRSLRS GDSLESSSGV ERRERTEAVA VPTETTSLLE 180
  181 AGNGGSGYSL RDAEAIDRKW EEAVVAGLIH TTWKREALVI SRYAAPLTVT FLLQYSLTVA 240
  241 SIFSVGHLGK KELGAVSLAS MTANITGYAV YQGLATSLDT LCSQAYGSGK KKLVGLQMQK 300
  301 MVFFLWTITI PIALIWFFAD MILLRIVPEK EVAKLAGLYL KVVALGAPGY ACFESGKRYM 360
  361 QAQGLFSASL FVLLICAPFN AFMNWFLVWK VGLGFVGAPI SVAITDWLMP FFLFLYVYFV 420
  421 AGSECWNGLT NRAFRNWGPM IQLALPGLVM VEAECLAFEV LTLASSWLGT TPLAAQSILS 480
  481 TIASITFQIP FPVSISGSTR VANLIGATLV DAAKTSAKVT MGGAVIVGLL NMIVLSSLRH 540
  541 YIPLLFTSDE EVIKLVAGVL PLCAAFQLFD ALAANCNGIM RGIGRQEIGG YVQLFSYYAI 600
  601 AMPISFGTTF GLNWGLFGLW SGVAIALCLV SIIEMIFLTR ADWNRAVTDA LRRNAMA