YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3114719, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.20
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	586	0.71
Transmembrane Helix	587	606	0.86
Cytoplasmic	607	640	0.67
Transmembrane Helix	641	660	0.83
Non-Cytoplasmic	661	667	0.71
Transmembrane Helix	668	690	0.91
Cytoplasmic	691	698	0.78
Transmembrane Helix	699	719	0.77
Non-Cytoplasmic	720	777	0.56
Transmembrane Helix	778	792	0.20
Cytoplasmic	793	806	0.55
Transmembrane Helix	807	832	0.75
Non-Cytoplasmic	833	930	0.60
Transmembrane Helix	931	948	0.48
Cytoplasmic	949	1233	0.89
Transmembrane Helix	1234	1256	0.88
Non-Cytoplasmic	1257	1266	0.79
Transmembrane Helix	1267	1289	0.87
Cytoplasmic	1290	1305	0.86
Transmembrane Helix	1306	1331	0.89
Non-Cytoplasmic	1332	1344	0.77
Transmembrane Helix	1345	1367	0.81
Cytoplasmic	1368	1373	0.58
Transmembrane Helix	1374	1395	0.86
Non-Cytoplasmic	1396	1413	0.70
Transmembrane Helix	1414	1432	0.77
Cytoplasmic	1433	1562	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYTHAERMY AERPIEGREG AQIPLHSDNY RGEPIQPHDS SSSESEINND GTWGEHEQGG  60
   61 PVNCSTAMHE YEDLRHQLTH LSKTRSQKSV ATARKASAMK RTMTNASRRS RATAGEDIEA 120
  121 QEEEEKLEEA AADEDEFVLG DFLKDGHFEK RNTKGSAKKV GVIYKNLTVQ GVGATSTYVK 180
  181 TLPSAIMGTF GPDLYKLLTR FIPALPKPGS NGQRRDLIHD FTGCVRDGEM LLVLGRPGSG 240
  241 CSTFLKAISN KRGDYAGVTG EVSYGGISAE EQAKHYRGEV NYNEEDDQHF PSLTVEQTLD 300
  301 FSLLNKTKKH EKGDIPTIIT ALLKMFGISH TRHTLVGDAF VRGVSGGERK RVSIAETLPT 360
  361 KKTVVSWDNS TRGLDASPAL DYANSLRVMT DISNRTTLVT LYQAGEQIYE LMDKVLVIDE 420
  421 GRMVYSGPAG DAKKYFERIG YYCPPRKTTA DFLTACTDPA ERRFQKDFEG PIPKGPVELE 480
  481 KAFRESEDYR LLQEDVESYE RMLHETDHAD ARQFKASVEE TKSKTVGPRS PYTVSFFRQV 540
  541 LACTKREVEL TLGDKTTLYT KFFIIISNSL IVGSLFHGQS SNTLGNFSRG GTLFFSILFL 600
  601 GWLQLSELMK AVGGRPIISR HKDYAFYRPS AVVVARVVQD FPLLLLQVVP FSIVVYFITG 660
  661 LDVDAGKYFI YVLFIYLTTI CITSLYRMFA ALSPSIDDAV RFSGIGLNLL IIYTGYVIPK 720
  721 PQLVSEYIWF GWLYYINPLS YSFEAGISDE FYNKNITCAP DQIVPSGPGY TNPEFQGCAS 780
  781 TGAEVGSLSV SGARYLEQSF NYSRSHLWRN FGVVIAWTVL YIIVTAIATE VFDFTTGGGG 840
  841 ALEFKRSKAA KNKVKAENAT PDEENSPAST SPVPTSGASS SNTLEPPQEE ALKDITGSES 900
  901 VFTWENVEYT VPYLGGERKI LNGVNGYPKP GIMVALMGAS GAGKTTLLNT LSQRQKTGVV 960
  961 TGDMLVDGRP LGTAFQRGTG FCEQMDLHDG TDTIREALEL SAILRQEHTV PRAEKIEYVD1020
 1021 KIIDLLELGD MQDALVRSLS VEQRKRVTIG VELAAKPNLL LFLDEATSGL DSQSAYSIVR1080
 1081 FLKMLSAAGQ AIVWSIHQPS SVLIQEFDMI LALNPGGNTS YFGPVGENGS AVVKYFGDRG1140
 1141 VQCPPLKNVA EFILETAAKG GKRRDGKKIN WNEEWLNSNE NKTVMQEIVR IKSERGKIAA1200
 1201 PEASSQREFG SPVTLQTTEL TKRLFTQYWR DPSYLYGKLF TSVIIGIFNG FTFWQLGHSI1260
 1261 IDMQNRMFTS FLIILIPPTI VNAVVPKFYQ NRALWEAREL PSRIYGWVAF CTANIVAEIP1320
 1321 IAIVGVVIYW ALWYWPTGLP SDSSTSGYVF LMTMLFFLFQ ASWGQWICAF APSFTVISNV1380
 1381 LPFFFVMFGL FNGVVRPYSQ ISVFWRYWLY YVNPATYWIG GIIAATLSNV PIECASNEAA1440
 1441 YFNPPSGQTC SSYASDFVTS AGVGYLTNPD APPKLRILPY PSGEEYMKTL HVTPQDKWRN1500
 1501 FGIFLGILYQ QLGVGLFLHQ QRGESEDGVS DSPTLFGGLG KMVGKVKSPF KGKEKKSVPE1560
 1561 SK