YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16944336
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSRYSLRQ TPRLDLGHHH VTFSTTPLSL LPGPCEAASR VKCGLLTFHD SKKELFQGMV  60
   61 ETPVRRNTRR SKSQIPESSD GESSASATET VSKQTSAKAK NDTLRKRNLK TTGKFFEHID 120
  121 EEENTMQPTP PYTSSDEPDV ENAPLLSGNS SSSSRSSLDA NGKPGAEKLI DGWRPGMDPK 180
  181 IDTSGHFEFG GSLGTGAMMI FFPILMWYMW IGATQYNGGI PSREPGQSWA DFAAHLCDLV 240
  241 YTKAFPHAKA WLWYWTFLIF EGAFYCLMPG VTAYGKPLPH EGGKMLKYHC SAYVSFYVTF 300
  301 AIAGVLHFTG IFPLYQIIDE FGPLLSVAII SGFLVSIVAY VSAFVRGATH RMTGHHVYDF 360
  361 FMGAELNPRM FGVLDFKMFF EVRLPWYILL LLSLGAAARQ WDRYGYVSGE VGFLVMAHYL 420
  421 YANACSKGEE LIVTTWDMYY EKWGFMLIFW NLAGVPLSYC HCTIFLASHH PDEYRWNRFA 480
  481 LVGLYVSYLF VYWVWDTCNS QKNRFRAQER GKLLYRKTFP QLPWQTVKNP QKIETETGDS 540
  541 ILVDGWYGLA RKVHYTCDAY FAICWGLITG FSSPFPWFYP VFFCCMIAHR AWRDITRCRE 600
  601 KYGDAWKEYE RRVPYLFIPY VI

Type	Start	End	Confidence
Cytoplasmic	1	188	0.93
Transmembrane Helix	189	211	0.89
Non-Cytoplasmic	212	251	0.92
Transmembrane Helix	252	274	0.90
Cytoplasmic	275	292	0.82
Transmembrane Helix	293	311	0.94
Non-Cytoplasmic	312	323	0.70
Transmembrane Helix	324	344	0.95
Cytoplasmic	345	378	0.92
Transmembrane Helix	379	399	0.77
Non-Cytoplasmic	400	445	0.73
Transmembrane Helix	446	467	0.92
Cytoplasmic	468	475	0.70
Transmembrane Helix	476	495	0.90
Non-Cytoplasmic	496	574	0.74
Transmembrane Helix	575	592	0.67
Cytoplasmic	593	622	0.80