YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21622384
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSIEQALL SLLPTHNTTL PQPLVDLASS LLAQSRHRAS TLKAEEEIAR TYACAHLACD  60
   61 RLKITLNLPP IRPPPSHSTT HLQAPLLPPL QYPPLHLFNP RPRRWNPQKS RTNNRRHSTQ 120
  121 PTDTGRSARS NRSAATGRTT TPGTTTGPGK EKPLHQFRGT LFPRKDGTSG EGGGLPGWMK 180
  181 PTLRFLLKEL GPSHIGPVVM SGLESIVAPR GQRTEDEWVN ANLVSLLGAL YLLVWRGVTW 240
  241 PGSDIDEGKY LAMRKKVVAA LKKARENVKV AVKLGTGREE EEEQDEEKVW EGWVDDGARV 300
  301 KDLNAATLHI GREGWLEMDW AAGVEDLART VLEKEDYDDA AEDGRGSDKV DLFRVGQGDS 360
  361 MFQDRYDYLG ERKQKEYAIW KQGILRKIKA LENPSASTTA TPRKRKVPEA IWILTRMSEQ 420
  421 VTRRSKG

Type	Start	End	Confidence
Signal Peptide	1	21	0.50
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	427	0.97