YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4521097, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPLPPSFV VPATQTETRR DPLQHEELPP LFPEKITIYN IWRYLDYKHV VGLGLTPLIA  60
   61 LYGLLTTEIQ TKTLIWSIIY YYATGLGITA GYHRLWAHRA YNAGPAMSFV LALLGAGAVE 120
  121 GSIKWWSRGH RAHHRWTDTE KDPYSAHRGL FFSHIGWMLI KRPGWKIGHA DVDDLNKSKL 180
  181 VQWQHKNYLP LVLIMGVVFP TLVAGLGWGD WRGGYFYAAI LRLVFVHHAT FCVNSLAHWL 240
  241 GDGPFDDRHS PRDHFITAFV TLGEGYHNFH HQFPQDYRNA IRFYQYDPTK WVIALCAFFG 300
  301 LASHLKTFPE NEVRKGQLQM IEKRVLEKKT KLQWGTPIAD LPILSFEDYQ HACKNDNKKW 360
  361 ILLEGVVYDV ADFMSEHPGG EKYIKMGVGK DMTAAFNGGM YDHSNAARNL LSLMRVAVVE 420
  421 YGGEVEAQKK NPSMPIYGTD HAKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.51
Transmembrane Helix	47	66	0.69
Cytoplasmic	67	73	0.67
Transmembrane Helix	74	96	0.82
Non-Cytoplasmic	97	102	0.72
Transmembrane Helix	103	126	0.86
Cytoplasmic	127	186	0.80
Transmembrane Helix	187	208	0.92
Non-Cytoplasmic	209	217	0.65
Transmembrane Helix	218	240	0.79
Cytoplasmic	241	445	0.61