YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1870132
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRQLYYYR STKHIYQGIS ITSTIILSVF LILSIFTYGC SISNLPLKDS GKFGIFYLEH  60
   61 INYLWVMANL VKSFKYIPQM SINWMGCSTM GLSSKFVLIS VLAEFIDFVG RLFVPTSALF 120
  121 YKIPFNSTPF WVKLIQFITL LVILCQVQYL YVGRKPRLPK GKL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	39	0.90
Non-Cytoplasmic	40	52	0.81
Transmembrane Helix	53	74	0.72
Cytoplasmic	75	90	0.64
Transmembrane Helix	91	110	0.77
Non-Cytoplasmic	111	131	0.81
Transmembrane Helix	132	152	0.93
Cytoplasmic	153	163	0.95