YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1870130
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVIDWSVQL CIGVLGPVFR ALVQLPLSIF IWNGFQLVAL PVNIPLKLIL GTSLYRLVAH  60
   61 TGAVDYYVVL TLFQYLAVLC AFGGIIGLIS GFVFGVFHSI CGVPSVYVSL EWKPWFAPVH 120
  121 RFFERVSTTI INIMQGQTTA PIPMSMPMRM SSLGKKHPNE REEEEIDDAT ITHENNGYMT 180
  181 PCQTPTNEKF QHYNNDSFNT TTTDDEPTDI WDRSDTYQNS FATNETLMSL SNRANLRRNV 240
  241 SDADIVNIKA LRRNSR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.62
Transmembrane Helix	10	44	0.64
Non-Cytoplasmic	45	66	0.34
Transmembrane Helix	67	101	0.73
Cytoplasmic	102	256	0.70