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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6073782
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPQRPDPT SPGHRGSGRH HRLNDVESGP GHYVDEQQYS SPPTRRPTLP AGGGPQAGGI  60
   61 PGSPDAYAPT GTPDFGRKRS LIRPERNRID RDHPNYYYRQ HAQRQNMNVL PSTTGNDPIV 120
  121 EDRTEAVSHA STDSTDLKSL TRPTQSNPRY SEDGVETVPK RHTPNKLVRA HSKRRSLDEK 180
  181 EKLKRQDDAV RPPSLWNVYC AIVTFWCPGA LLKCFGKPAK AQQRAWREKM GLISIILLIC 240
  241 AFVGFLTFGF TQAVCRSPVQ RLKVNHVGGG YMIIHGRAYD LTTSKHPATV DFPANRNVLY 300
  301 DLPEKNGGKD ASFLFQNVNG QCKGLITPTE KSMIPTDSSG GMAWYFPCRV FNQDGSTKPN 360
  361 LNMTDQKYLG YACHTSGAAR QDYYNLNVTT DVYFTWDDIK NSSRTLLVYS SSVLDLDLLK 420
  421 WVDKTQVKYP SQFDELRKDP GLRGTDVTHL FQGPVEKKLV KCLSEIIRVG SIDTETVGCI 480
  481 ASKVVLFVSL VFIVSIVLIK FLLALFFGWF LSWRLGATRT SDVRKDMKKR MNEIEDWSDD 540
  541 IYRPPPKLKD ATAPAGDRSK RGSFLPTTSR FTSPYAQERP QSRHRPFPTT MGSQSSTARL 600
  601 LSPGQAMYQQ VGQSGSKGSL SGMMTESMSG SNLLGPGHGG QPGERFSVYS EIDGPGPAGF 660
  661 IHEAVVPQPP PEYQPFGFPL AHALCLITCY SEGEQGIRTT LDSIATTDYP NSHKLMLIVC 720
  721 DGMIKGHGET KTTPEIILSM LKDHAVHPDA VQGFSYVAVA SGAKRHNMAK VYAGFYDYGE 780
  781 NSQIPPEKQQ RVPMLVVVKC GTPDEEGGGK AGNRGKRDSQ IILMSFLQKV MFDERMTELE 840
  841 FEMFNGIWKI TGISPDYYEV VLMVDADTKV FPDSLTHMVA AMVNDPDIMG LCGETKIANK 900
  901 TGSWVSMIQV FEYFISHHLT KAFESVFGGV TCLPGCFCMY RIKTPKGGQN YWVPILANPD 960
  961 VVEHYSENVV DTLHKKNLLL LGEDRYLSTL MLKTFPKRKQ VFVPQAVCKT IVPDEFKVLL1020
 1021 SQGRRWINST VHNLMELVLV RDLCGTFCFS MQFVVFIELI GTLVLPAAIT FTFYLIIISF1080
 1081 VAKPVPVIPL VLLALILGLP AVLIVLTAHR WSYVFWMLIY LISLPVWNLI LPSYAFWKFD1140
 1141 DFSWGDTRKV AGETTKKAGI EYEGEFDSSK IVMKRWADFE RGSFPPPQKT GCDANKNIDR1200
 1201 RQRLPQSGWA PQPAGSWSHQ QGYEGECQDM 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle