YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|164426759, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKSLLNLR KRNSLDDQPK ERYSPQPQTR DASYERTLQG EEGVPSDEQI KRATRLRRYF  60
   61 AWSASFGYLV SWVFLILILI GNTSDKPVLR NVYFYKLNLA DIIPESVPNA QLINSIAQSI 120
  121 GLHDFYQVGL WNFCEGYQSE GITYCSEPET LYWFNPVKVI MSELLSGATV AIPTAIITIL 180
  181 SVLRITSQIM FGFFLTACVL NFVLIFVSPI LPVKSRWWSL PLSLFSFASM ILTLAASIIG 240
  241 TVISYAFKYA AEAQSDLNIH ADVGTYMFVF MWIATGFTMW SFAVHSGMGC CCASKRDLKS 300
  301 GRRLIKPDGR IIHAG

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	81	0.92
Non-Cytoplasmic	82	159	0.90
Transmembrane Helix	160	183	0.80
Cytoplasmic	184	189	0.69
Transmembrane Helix	190	211	0.92
Non-Cytoplasmic	212	223	0.65
Transmembrane Helix	224	247	0.88
Cytoplasmic	248	262	0.61
Transmembrane Helix	263	284	0.79
Non-Cytoplasmic	285	315	0.72