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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18376151
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSHSIQFN AVPDWSTHYI AYSNLKKLIY QLEKVIHLSS GGDGESRPLI QHEDPEIVFV  60
   61 RALDVELEKV LSFYTVKERE LFEEVQNVLR DVDAFDEQSG DTDQERQLRP PTRGSEQQRP 120
  121 LRARSESLPS RASTDEGSNS DQSDNENTGL NTRGKQRRLS PGRRKSSTVI PGHMMSSIGD 180
  181 MTASTEMTRS RRFSTTFDDD YAEQAVLFSS GIMLKKRIIN LYVQLCELKS YIQLNRTGFS 240
  241 KVLKKFDKII DRQLRSKYMD TFVDTAYAFR PETTKTLEEQ IHLMVHAYMD IVTQGDEAAA 300
  301 TRDLRSHLRE HVVWERNTVW RELIGMERRA EAASLGHTLL GRDTDPTSHR LQGDDELMLP 360
  361 TKEIATPLGR FRLPAWLVSS TLMTLVIIFA IFFALLFIPI MKKPEQQNCL ALLVFVSLLW 420
  421 ATEAIPLFVT SLTIPFLCVV LRVFRDADKP HHRLGAKATT DAVFSAMWTP VIMLLLGGFT 480
  481 LAAALSKCGI DKRIATFVLS KAGTQPRTVL IANMAVAAFA SMLISNVAAP VLCFGIIEPM 540
  541 LRNLPAGSNM SKAVIMGIAL ASNVGGMLSP IASPQNIVAI GLMEPPPTWG EWFFIVIPVG 600
  601 VISLLLIWVL LLLTFQPGKG TSIVPIRPVK DRFTGVQWFV TLVTVATIGL WCASHQLEAE 660
  661 FGHMGVIAII PIVLFFGVGI LTKEDFNNFP WTIIILAAGG LALGKAVNSS GLLHTVTRLI 720
  721 TEDVQDFSLY GVLIVFSSLI LVIATFISHT VAALIILPLV YDVGKGLDEP HPNLLVMAGV 780
  781 LMCSAAMALP TSGFPNMTAI MKEDPAGQRY LQVKHFISRG VPSSLLTLLV TVTVGYAAMR 840
  841 VVGM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle