YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18376335
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRTLPTLT IDEVESHNSA KSCYVTVGRN VYDVTDFLDS HPGGADLVLD WAGKDIGAIL  60
   61 KDEASHTHSE AAYEVLDESL VGYLASGNGA AANGTTKDGE NGTEQQWVHP RTGMSCEEDL 120
  121 SKDTDYNADY KTHKFLDLNK PLFMQIWNGG FSKEFYLDQV HRPRHYKGGE SAPLFGNFLE 180
  181 PLSKTPWWLI PLVWWPPISY GVSVAFQGFG SVAPVAGYFG FGLAFWTLID YLPDNRVGIT 240
  241 AHFLLHGIHH YLPMDRYRLV MPPTLFVVLA APFWKFAHAI LFYNWYAATA AFCGGVFGYT 300
  301 LYDMTHYFLH HQNLPAYYKE LKKYHLAHHF LDYENGFGVT SAFWDKIFGT ELVYNPKTN

Type	Start	End	Confidence
Cytoplasmic	1	186	0.90
Transmembrane Helix	187	210	0.64
Non-Cytoplasmic	211	211	0.33
Transmembrane Helix	212	233	0.66
Cytoplasmic	234	256	0.51
Transmembrane Helix	257	277	0.78
Non-Cytoplasmic	278	281	0.52
Transmembrane Helix	282	302	0.88
Cytoplasmic	303	359	0.69