YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16944692
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.95
Transmembrane Helix	47	68	0.81
Non-Cytoplasmic	69	84	0.68
Transmembrane Helix	85	104	0.82
Cytoplasmic	105	113	0.86
Transmembrane Helix	114	133	0.96
Non-Cytoplasmic	134	140	0.73
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	174	0.78
Transmembrane Helix	175	195	0.95
Non-Cytoplasmic	196	204	0.88
Transmembrane Helix	205	227	0.89
Cytoplasmic	228	240	0.91
Transmembrane Helix	241	263	0.91
Non-Cytoplasmic	264	271	0.84
Transmembrane Helix	272	293	0.93
Cytoplasmic	294	309	0.91
Transmembrane Helix	310	332	0.88
Non-Cytoplasmic	333	348	0.90
Transmembrane Helix	349	371	0.90
Cytoplasmic	372	378	0.85
Transmembrane Helix	379	396	0.96
Non-Cytoplasmic	397	407	0.70
Transmembrane Helix	408	431	0.87
Cytoplasmic	432	444	0.94
Transmembrane Helix	445	469	0.85
Non-Cytoplasmic	470	528	0.91
Transmembrane Helix	529	551	0.92
Cytoplasmic	552	581	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKETNTPEE VLGSAEKSMN VTSKTSNDDT KAHEFNEQTN YVPKRTIITI FLACAGVDLL  60
   61 ALIDQTTLAT SLYIIGNALG STSQVSWIAN GYFITSTVGQ LLYGRLSDIW SRKVILLTGL 120
  121 AIFFLGSLAS SLAQSVLQLT IFRAFTGIGG GGLMTVAQLI VSDVVPLRER GKYQGIIGAV 180
  181 VAIANGIGPV IGGALSSKSE DSWRWIFRIN MPLTVLTILA VVFFMPLKKV RGDWKVKLKA 240
  241 VDFIGILVAL AGTIVLMLGL TWGGGEYPWD SAHVIATLVT GFVACVAFVL WQWKGPRYPL 300
  301 VPLHIFKSKI VNGACITMAI NGWNFVVQVY YIPSFYQLVY EYSATRAGAM LLPVTLVQTA 360
  361 SSTLSGLVVH WVGRYRESIL FGWVCWAVGL GLMSTLDETT GIGKQIGYSI LIGVGVGNTL 420
  421 QPALIAVQAG VVRRDMAVVT SFRNFVRNLG ATIGLAVCGT IIVVYTWSAN TFISVGSNNV 480
  481 LAGSLGSLDI DHDASKTLLS NPQMYLRTVS KAEADRIRGV LIPAYRKGFH IIFMTGAALC 540
  541 ALAFVIAFFM LPQVELSRPD DEKLREEGRK AYEDKKRQDS A