YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12718295
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	36	0.88
Non-Cytoplasmic	37	44	0.90
Transmembrane Helix	45	67	0.92
Cytoplasmic	68	129	0.95
Transmembrane Helix	130	149	0.87
Non-Cytoplasmic	150	156	0.72
Transmembrane Helix	157	180	0.85
Cytoplasmic	181	187	0.79
Transmembrane Helix	188	209	0.88
Non-Cytoplasmic	210	224	0.96
Transmembrane Helix	225	246	0.92
Cytoplasmic	247	257	0.94
Transmembrane Helix	258	280	0.91
Non-Cytoplasmic	281	296	0.81
Transmembrane Helix	297	317	0.67
Cytoplasmic	318	318	0.48
Transmembrane Helix	319	343	0.77
Non-Cytoplasmic	344	349	0.56
Transmembrane Helix	350	368	0.92
Cytoplasmic	369	410	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSWVTNMGR RTLGIVLLLV VVFLWTVSNF LASVMFADGS YNKPFFLLYV NISMFALALI  60
   61 PMGIRHVMQY GWPASKRQLV EAWYEIRQGR SYQKVAMVDD EDARAGESLL IDDTGSLKSN 120
  121 KCEQLSLAET FWLSLEFSML WFAANYFASA CLEYTSVGSV TILSSTSSIW TLIFCALAGV 180
  181 EGFTVRKLLG VLASLAGVVL ISSLDMSGAS DEMRGDFPEK SRTEIAIGDA MAFFSAIVYG 240
  241 VYVTVMKKRA VDEDRMNMTL FFGIVGVLNL VFLWPLFIIL HVTGIETFEL PPNGTTWAII 300
  301 WINTISSFFS DIIWAYAMLL TTPLVVTVGL SLTIPLSLIG EMIQYHQYSS WIYWVGAGIV 360
  361 VFSFVFVNNE SHEEGNGNGE CKANDKEQPT TTEVRNVVGG SSSSDAAIAV