YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12718328
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQHKVLML GAGFVTRPTL DVLSEAGIPV TVACRTLASA QKLSEGVKNA TPISLDVTND  60
   61 EALDAEVAKH DLVISLIPYT FHATVIKSAI RQKKHVVTTS YVSPAMMELD AEAKAAGITV 120
  121 MNEIGLDPGI DHLYAIKTID EVHQAGGKIL SFLSYCGGLP APEDSDNPLG YKFSWSSRGV 180
  181 LLALRNAGKW WQDGKIVEVE GKDLMKMAKP YFIYPGYAFV AYPNRDSTIY KERYNIPEAQ 240
  241 TVIRGTLRYQ GFPQFIKTLV DIGFLDDTAR ESLSKQTPWK EATKEIVGAA SSSQADLEAA 300
  301 ILSKATFESA EDQKRILSGL RWIGLFSDET ITPRGNPLDT LCATLEQKMQ FEEGERDLVM 360
  361 LQHKFEIEHA DGSRETRTST LVEYGDPKGY SAMAKTVGVP CAVAVKQVLS GQISGKGVLA 420
  421 PMSTDITEPL MKELHEKYGI TMIEKTIS

Type	Start	End	Confidence
Signal Peptide	1	24	0.77
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	448	0.99