YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157071195, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSTFLTSL SHVFGWTYFT CWSLSFYPQS ILNFSRKSTS GTTIDFPLIN SLGFFAYTIS  60
   61 NIAFAYSPLI RAQYAVRYKG LTPTVQLNDI TFAFHGLILC FVTVSQYLFP RAWGFAPSLG 120
  121 SRPSRFILGT FFGCVAGALI IIFRVWASPV RNDTSGAAVT EGGWVWLDAI YAVSYVKLVV 180
  181 TLIKYTPQVI VNYRNRSTEG WSILQILLDF GGGILSIAQQ AIDSYQQGDW SGITGNPVKF 240
  241 ALGNVSMIYD LVFIMQHYVL YRHAAGAKAD GAEGDSDLDP LLREDVRGGG DEERRIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.67
Transmembrane Helix	12	31	0.78
Cytoplasmic	32	45	0.74
Transmembrane Helix	46	66	0.86
Non-Cytoplasmic	67	90	0.80
Transmembrane Helix	91	110	0.94
Cytoplasmic	111	125	0.80
Transmembrane Helix	126	147	0.94
Non-Cytoplasmic	148	163	0.83
Transmembrane Helix	164	183	0.78
Cytoplasmic	184	200	0.82
Transmembrane Helix	201	222	0.82
Non-Cytoplasmic	223	239	0.85
Transmembrane Helix	240	260	0.73
Cytoplasmic	261	297	0.85