YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18652256
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTDGIPPML GQSSPLKLRK YEGRLSDDNF RNHVIAAIGE FLGTTLFLFY GFLAAQIINS  60
   61 KPDNLSDAPS LLQLIFVASA FGVSGAVNVW LFYRVSGGHL NPAITIGLTL IGAVPVTRAL 120
  121 LLVSVQLLGG ILAASLVLAV TPGSLNVQTA LGNATSVKQG FFLKMILTAT LVLTVFMLAV 180
  181 EKHRTTPLAP LGIGLILFLD VLLAAQFSGG SLNPARSFGP AVVELNFATY HWIYWFGPIA 240
  241 GAVLAAAIFK VLKFLAYETA VAGQDHDGLD VYRLIDDAGG HEVDREIQLE V

Type	Start	End	Confidence
Cytoplasmic	1	32	0.55
Transmembrane Helix	33	55	0.86
Non-Cytoplasmic	56	70	0.49
Transmembrane Helix	71	93	0.90
Cytoplasmic	94	105	0.43
Transmembrane Helix	106	140	0.73
Non-Cytoplasmic	141	159	0.70
Transmembrane Helix	160	180	0.94
Cytoplasmic	181	187	0.83
Transmembrane Helix	188	210	0.89
Non-Cytoplasmic	211	230	0.86
Transmembrane Helix	231	252	0.90
Cytoplasmic	253	291	0.92