YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28881157
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTRSSIPAT PRIISPSPTP SERDALDSYT GPMTRAARRR LATPLPVSEE GNEEDGVPAL  60
   61 RKARTRSRSP VETRPTAGRR TSKKRTTKTA DAKTTSTDST AAAPKGDMAV SEKQEKEVSN 120
  121 GHLLPPQPAG YTGWGWKDIS RSPSPLGLIP IHRHWKAFIH KHEVPRKALH VSIGFFVVWL 180
  181 YLSGTQTLSV CPYLMAALIP IAAVDVLRHH NAAFNRLYVK VLGALMRESE FTGYNGVIFY 240
  241 LLGAWIVLGF FPKDVGVVGT LLLSWCDTAA STFGRLYGRY TPRIRSGKSL AGSLAAFLVG 300
  301 VGTSAFFWGW LVPTKGPMPG DELFMFTGTL RLPQLLSEAV GLTPAQATIS GGLALGIMSL 360
  361 WSGFVAAASE VANVCGLDDN LTIPVLSGLG IWGFLKIFG

Type	Start	End	Confidence
Cytoplasmic	1	165	0.96
Transmembrane Helix	166	183	0.89
Non-Cytoplasmic	184	189	0.72
Transmembrane Helix	190	210	0.88
Cytoplasmic	211	230	0.91
Transmembrane Helix	231	251	0.92
Non-Cytoplasmic	252	256	0.81
Transmembrane Helix	257	278	0.90
Cytoplasmic	279	289	0.89
Transmembrane Helix	290	311	0.93
Non-Cytoplasmic	312	344	0.88
Transmembrane Helix	345	365	0.88
Cytoplasmic	366	375	0.72
Transmembrane Helix	376	395	0.67
Non-Cytoplasmic	396	399	0.48