YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3451049
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSHDPTYP LFPIFSFLGF ILSAIPFSWH LQAWNSGTCA FMIWTGLACL NGFINSLVWK  60
   61 GNSENPAPVW CDISSKLIIG VSIGIPAATL CISRRLYALT SVSTVSVTRA DKRRMVIVDL 120
  121 CISFGIPAII MVLHYVVQGH RFDILEDVGC YPVVYNTLLA YFLYIAWPVI LGIFSFVFSC 180
  181 LTLRSFWIRR AQFSQLVTSN SSMSMSRYLR LMILALVDIV CTVPLSAYPI YLGTHGVPLH 240
  241 PWVSWEETHY GFSRVDRIPA LFWRSSTTYV VGVELTRWLP VLCAFLFFAL FGFASEAQKQ 300
  301 YKRAYWAIVK PFGIEPHSAK QPIKVALPSW VKSANLDSTL SPKPHMRQHK QHVSLASTAN 360
  361 ASVDIASTVV GSDLEKSACR SSFSSIRSAP PTYSPSVPHH VALDVDIDQR SLFPSSPLSS 420
  421 DSTVFCPESP REKLPEPYTY SLPKSQFTRT SFERSNPSSP LSPSNHPGFH RPFSPPITYP 480
  481 PTTAHPSAAV AVDVIRATLR PLSQASDNLM FDQPRTMV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.83
Transmembrane Helix	9	31	0.88
Cytoplasmic	32	37	0.74
Transmembrane Helix	38	59	0.86
Non-Cytoplasmic	60	76	0.79
Transmembrane Helix	77	97	0.84
Cytoplasmic	98	115	0.94
Transmembrane Helix	116	137	0.94
Non-Cytoplasmic	138	163	0.92
Transmembrane Helix	164	187	0.90
Cytoplasmic	188	207	0.97
Transmembrane Helix	208	232	0.89
Non-Cytoplasmic	233	274	0.96
Transmembrane Helix	275	294	0.93
Cytoplasmic	295	518	0.96