YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14423327
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTNLTTYA AVFLGTLFLL LLSKFLRQRK LNLPPGPKPW PIIGNLNLIG NLPHRSIHEL  60
   61 SLKYGPIMQL QFGTFPVVVG SSVEMAKVFL KSMDINFVGR PKTAAGKYTT YNYSDITWSP 120
  121 YGPYWRQARR MCLMELFSTK RLDSYEYIRA EELHSLLHNL NKISGKPIVL KDYLTTLSLN 180
  181 VISRMVLGKR YLDESENSIV TPEEFKKMLD ELFLLNGVLN IGDSIPWIDF MDLQGYVKRM 240
  241 KFVSKKFDKF LEHVIDEHNV RRNGVENYIA KDMVDVLLQL ADDPTLEVKL ERHGVKAFTQ 300
  301 DMLAGGTESS AVTVEWAISE LLKKPEIFKK ATEELDRVIG QNRWVQEKDI PNLPYIEAIV 360
  361 KETMRLHPVA PMLVPRECRE DCKVAGYDVK KGTRVLVSVW TIGRDPTLWD EPEAFKPERF 420
  421 HEKSIDVKGH DFELLPFGAG RRMCPGYNLG LKVIQASLAN LIHGFNWSLP DNMTPEDLDM 480
  481 DEIFGLSTPK KFPLATVIEP RLSPKLYSV

Type	Start	End	Confidence
Cytoplasmic	1	5	0.31
Transmembrane Helix	6	26	0.56
Non-Cytoplasmic	27	509	0.83