YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P80_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVISGLLFF ILISCSLFLV QGQVDCVTNS SDASCTNFQY PLANITADIN NLCGSMPYMP  60
   61 VCTIQQSCNQ ESSTSGICDP FSILGDSCLH DMPGMSGCNN FKKLCASGSV VEQCSTVDSV 120
  121 TDLPTTMKMW ANIKSICNEM TMTGCEKCTI LNATCDVLTV YSTLCLAMPE MGQCANWTQM 180
  181 CASSGNMASS PISSGICTDE PTPATDCFTN PSDPSCADYV YTAANANADI LNLCKSMPYM 240
  241 TVCSIQKSCN QESSTSGICA PFSILGDSCL HDMPGMNGCS NFKKLCASGS VVEQCSSVDS 300
  301 ISNLPTTMQL FAGIKSICTE MAMDGCEKCS GNSPTTTCDV LPVYSSLCMA MPDMSQCANW 360
  361 TKMCSSSGQL YNSQITSDYC VASVADAVPI MRMYFHTGIL DYILFKSWVP RTDRQFAGSW 420
  421 FAIFFFAIFF ELEKTLRSIL EKRWTPNKKD SEDNNLINSS FLSGSYPKFS YRDIIRGCLH 480
  481 AIELTCSYAL MLVAMTFNVA LFFAVIAGVL VGNILFGRYR NYTPRVTCCE

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	415	0.99
Transmembrane Helix	416	435	0.84
Cytoplasmic	436	483	0.78
Transmembrane Helix	484	516	0.75
Non-Cytoplasmic	517	530	0.51