YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1871639
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFVT AVSRPGLGEP RYMEVGYVDD TQFVRYDSDA ENPRYEPRAP WMEREGPEYW  60
   61 ERETQNAKRN EQVYRVDLRT ALRYYNQSEG GSHTIQRMYG CDMGSDGSLL RGYYQDAYDG 120
  121 RDYIALNEDL KTWTAADFAA QITRSKWDQA GVAERLRAYL EGTCVEWLRR YLELGKETLL 180
  181 RSDPPEAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPEPL SQRWEPSPST NSNMETTVIY VVLGAIIGTL 300
  301 AIIGIVVAVV RKRRRNTGGK GDYTPAPGRD SSQSSDVSLP DCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.98
Transmembrane Helix	287	310	0.94
Cytoplasmic	311	344	0.99