YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1871635
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSMRYFDI AVSRPGLGEP RFIIVGYVDD TEFVRFDSDA EKPRYEPRAP WMEPEGPEYW  60
   61 EEQTRRAKEG EQTFRVNLRT ALHYYNQSED RSHTIQRLSG CDVGSDGRLL RGYEQYAYDG 120
  121 RDYIALNEDL KTWTAADFAA RISRNKWDQA GVAERLRAYL EGECVEWLRR YLELGKETLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPEPL SQRWEPPPST DSNMETTVIY VVLGAVAIIA 300
  301 AVIIGAVVTV VRKRRRNTGG KGVYTPAPGT DSSQSSDVSL PDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.98
Transmembrane Helix	288	311	0.93
Cytoplasmic	312	345	0.99