YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1483574
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSMRYFDI AVSRPGLGEP RYISVGYVDH TEFVRFDSDA ENPRYEPRAP WMEREGPDYW  60
   61 ERETQKAKGN EQNYRVSLRN LRGYYNQSEG GSHTIQRMYG CDVGTDGSLL RGYRQDAYDG 120
  121 RDYIALNEDL KTWTAADFAA QITRNKWDRA GVAERLRAYL EGTCVEWLRR YLEHGKETLL 180
  181 RLDPPKAHVT LHPRPEGDVT LRCWALGFYP ADISLSWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPEPL TQRWEPSLST DSNMETYVIY VVLGAVAIIA 300
  301 AVIIAAVVAV VRRRRKRNTG GTGGDYAPAP GRDSSQSSDV SLPDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.98
Transmembrane Helix	287	310	0.95
Cytoplasmic	311	347	0.98