YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	44	0.92
Non-Cytoplasmic	45	148	0.97
Transmembrane Helix	149	170	0.90
Cytoplasmic	171	177	0.87
Transmembrane Helix	178	198	0.92
Non-Cytoplasmic	199	210	0.66
Transmembrane Helix	211	231	0.85
Cytoplasmic	232	237	0.82
Transmembrane Helix	238	259	0.92
Non-Cytoplasmic	260	263	0.87
Transmembrane Helix	264	283	0.91
Cytoplasmic	284	349	0.97
Transmembrane Helix	350	371	0.91
Non-Cytoplasmic	372	377	0.83
Transmembrane Helix	378	398	0.92
Cytoplasmic	399	406	0.81
Transmembrane Helix	407	424	0.96
Non-Cytoplasmic	425	431	0.76
Transmembrane Helix	432	453	0.85
Cytoplasmic	454	463	0.75
Transmembrane Helix	464	485	0.91
Non-Cytoplasmic	486	492	0.79
Transmembrane Helix	493	514	0.92
Cytoplasmic	515	555	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVDDILEH IGEFHLFQKQ TFFLLALLSG AFTPIYVGIV FLGFTPDHHC WSPGAAKLSQ  60
   61 RCGWSQAEEL NYTVPGLGPS DEASFLSQCM RYEVDWNQST LDCVDPLSSL AADRNQLPLG 120
  121 PCEHGWVYNT PGSSIVTEFN LVCAHSWMLD LFQSVVNVGF FIGAMMIGYL ADRFGRKFCL 180
  181 LVTILINAIS GALMAISPNY AWMLVFRFLQ GLVSKAGWLI GYILITEFVG LGYRRMVGIC 240
  241 YQIAFTVGLL ILAGVAYVIP NWRWLQFAVT LPNFCFLLYF WCIPESPRWL ISQNKIVKAM 300
  301 KIIKHIAKKN GKSVPVSLQN LTPDEDAGKK LNPSFLDLVR TPQIRKHTLI LMYNWFTSSV 360
  361 LYQGLIMHMG LAGDNIYLDF FYSALVEFPA AFIIILTIDR VGRRYPWAVS NMVAGAACLA 420
  421 SVFIPDDLQW LKITIACLGR MGITMAYEMV CLVNAELYPT YIRNLGVLVC SSMCDIGGII 480
  481 TPFLVYRLTD IWMEFPLVVF AVVGLVAGAL VLLLPETKGK ALPETIEDAE NMQRPRKKKE 540
  541 KRIYLQVKQA DRPLS