YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1871633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFYT AVSRPGLGEP RYMEVGYVDD TEFVRFDSDA ENPRMEPRVQ WIEREGPEYW  60
   61 ERETQNAKEN EQVYRVDLRT LRGYYNQSEG GSHTIQEMYG CDVGSDGSLL RGYRQDAYDG 120
  121 RDYIALNEDL KTWTAADFAA QITRNKWERA RYAERLRAYL QGTCVEWLRR YLELGKETLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP ADISLSWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPEPL SQRWEPSLST DSNMETTVIY VVLGAVAIIA 300
  301 AVIIGAVVAV VRKRRRNTGG KGDYTPAPGR DSSQSSDVSL PDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.98
Transmembrane Helix	287	311	0.92
Cytoplasmic	312	345	0.99