YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18071387
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.56
Transmembrane Helix	25	46	0.63
Cytoplasmic	47	66	0.78
Transmembrane Helix	67	89	0.75
Non-Cytoplasmic	90	92	0.67
Transmembrane Helix	93	114	0.92
Cytoplasmic	115	134	0.97
Transmembrane Helix	135	158	0.87
Non-Cytoplasmic	159	166	0.83
Transmembrane Helix	167	187	0.91
Cytoplasmic	188	197	0.88
Transmembrane Helix	198	218	0.89
Non-Cytoplasmic	219	232	0.82
Transmembrane Helix	233	252	0.93
Cytoplasmic	253	258	0.78
Transmembrane Helix	259	278	0.89
Non-Cytoplasmic	279	301	0.85
Transmembrane Helix	302	321	0.96
Cytoplasmic	322	333	0.93
Transmembrane Helix	334	355	0.89
Non-Cytoplasmic	356	421	0.97
Transmembrane Helix	422	446	0.83
Cytoplasmic	447	459	0.77
Transmembrane Helix	460	478	0.90
Non-Cytoplasmic	479	487	0.71
Transmembrane Helix	488	511	0.89
Cytoplasmic	512	516	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDEPINAHK LLKEQFVSNL TGSSLLEIAA LSTVVPAVVV LRKWSCGDNT RKNSLKKNDD  60
   61 ALPGHKGFVH YFSTLAIDYL SIVLPVLLIF TVLAEWACAC ALSLVMLISI LTMFKRSRSH 120
  121 LKAGPNELPL LRADISSYRV SVVLVTCLCI LAVDFKIFPR RYAKAETYGC GIMDLGVGSF 180
  181 VVANALVSRQ ARNFTAMTWN KALMSISPLI FLGFARLIST SGVDYQVHVG EYGVHWNFFF 240
  241 TLAAISILTS VIRIHPKYCG LAGLLVLTGF QTWLSFGLNE YLISNERNGG IISQNKEGVY 300
  301 SIFGYWGMYL IGVSLGYNLF FDNSSKGKSR SSQVVKVWVL AASFWIMAII LDSYVERVSR 360
  361 RMVGTDIKKV GRDDWSVVIG GEEKISEKNG CDWLRGEVDD DVASLHVKLK ELVGDNFICN 420
  421 FAYVMLVFGQ NFQVISILTL AGFISYEKNL VLEDAFNQNM LGSFLLANIL TGVVNLSVDT 480
  481 LSASSGTAFM ILLVYSFTLC MIAALAQFCG IRMKFW