YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SBH2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFVISDEF LGTFVPILVY WVYSGMYICL GSLDKYRLHS KIDEDEKNLV SKSAVVKGVL  60
   61 LQQTLQAIIS VILFKITGSD ADAATTQQFS ILLLARQFII AMLVIDTWQY FIHRYMHLNK 120
  121 FLYKHIHSQH HRLIVPYSYG ALYNHPLEGL LLDTIGGALS FLFSGMSPRT AIFFFSFATI 180
  181 KTVDDHCGLW LPGNPFHIFF SNNSAYHDVH HQLYGTKYNF SQPFFVMWDR ILGTYLPYSL 240
  241 EKRANGGFET RPIKVSKDE

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.75
Transmembrane Helix	10	31	0.83
Cytoplasmic	32	91	0.65
Transmembrane Helix	92	112	0.83
Non-Cytoplasmic	113	148	0.63
Transmembrane Helix	149	172	0.64
Cytoplasmic	173	259	0.79