YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VSP55_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVPGYLRT CLDMGKIAFL AILVSTGIVL QILACALFNN WWPMLSVIMY VLLPMPLLFF  60
   61 GGSDSTSLFN ESDNSWINAA KFLTGASAVG SVAIPSILKH AGLIGWGALA LDLSSYVVFL 120
  121 VAILGYICIG DASDNYYSYI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.73
Transmembrane Helix	17	38	0.90
Non-Cytoplasmic	39	43	0.57
Transmembrane Helix	44	63	0.85
Cytoplasmic	64	78	0.58
Transmembrane Helix	79	98	0.88
Non-Cytoplasmic	99	107	0.48
Transmembrane Helix	108	130	0.87
Cytoplasmic	131	140	0.64