YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13605684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSDSVSI DMEALSLGGQ EHLVETTYGP VCVAVCGDPD KPALITYPDI ALNYMFCFQG  60
   61 LLFCPEASSL LLHNFCIYHI SPLGHELGAP MISVDAPLLS ADDLADQIVE VLNYFGLGAV 120
  121 MCMGVTAGAY ILTLFAMKYR QRVLGLILVS PLCQAPSWSE WLCNKVMSNL LYYYGTCGVV 180
  181 KEMLLKRYFS KEVRGNGHVP ESDIVQECRR LLSERQSTNV WRFLEAINGR VDLSEGLRKL 240
  241 QCRTLIFIGE NSAYHSEAVH MTTKLDRRYG ALVEVQGSGS LVSEEQPQAM IIPMEYFLMG 300
  301 YGLYRPTQSV SPRSPLSPTR ISPELLSPEN MGLKLKPIKT RLAL

Type	Start	End	Confidence
Cytoplasmic	1	55	0.83
Transmembrane Helix	56	77	0.58
Non-Cytoplasmic	78	113	0.78
Transmembrane Helix	114	136	0.89
Cytoplasmic	137	344	0.74