YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1871629
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFVT AMSGPGLGKP RFMEVGYVDD TEFVRYDSDA KNPGMEPRAR WMEREGREYW  60
   61 ERETRIAKGN EQTFRENLRT LLRYYNQSEG GSHTFQWMSG CDVGSDGSLL RGYEQHAYDG 120
  121 RDYIVLNEDL KTWTAADTAA RITRNKWDRA GVAERHKAYL EGKCLESLLR YLELGKETLL 180
  181 RSDPPKAHVT LHPRPEGDVT LRCWALGFYP AGISLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCL VEHEGLPEPL TQRWEPSPST DSNMETYVIY VILGAVAIIA 300
  301 AVIIVAVVAV VMKRRRNTGG KVGVYAPAPS RDSSESSDVS LSDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.88
Transmembrane Helix	287	311	0.93
Cytoplasmic	312	346	0.98