YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15620769
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRQRRVKAKA VSAGKKVSGA AAQNTVSYPD NLTYRDLYYF IFAPTLCYEL NFPRSPRIRK  60
   61 RFLLRRVLEM LFFTQLQVGL IQQWMVPTIQ NSMKPFKDMD YSRIIERLLK LAVPNHLIWL 120
  121 IFFYWLFHSC LNAVAELLQF GDREFYRDWW NAESVTYFWQ NWNIPVHKWC IRHFYKPMLR 180
  181 LGSNKWMART GVFLASAFFH EYLVSIPLRM FRLWAFTAMM AQVPLAWIVN RFFQGNYGNA 240
  241 AV

Type	Start	End	Confidence
Cytoplasmic	1	61	0.94
Transmembrane Helix	62	86	0.75
Non-Cytoplasmic	87	116	0.87
Transmembrane Helix	117	140	0.80
Cytoplasmic	141	185	0.88
Transmembrane Helix	186	204	0.78
Non-Cytoplasmic	205	210	0.61
Transmembrane Helix	211	233	0.81
Cytoplasmic	234	242	0.68