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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|732919, gi|21...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVTLTWDSGN TEPVSFYGIQ YRAAGTDGPF QEVDGVASTR YSIGGLSPFS EYAFRVLAVN  60
   61 SIGRGPPSEA VRARTGEQAP SSPPRRVQAR MLSASTMLVQ WEPPEEPNGL VRGYRVYYTP 120
  121 DSRRPLSAWH KHNTDAGLLT TVGSLLPGIT YSLRVLAFTA VGDGPPSPTI QVKTQQGVPA 180
  181 QPADFQAKAE SDTRIQLSWL LPPQERIIKY ELVYWAAEDE GQQHKVTFDP TSSYTLEDLK 240
  241 PDTLYHFQLA ARSDLGVGVF TPTVEARTAQ SMPSGPPRKV EVEPLNSTAV HVSWKLPVPN 300
  301 KQHGQIRGYQ VTYVRLENGE PRGQPIIQDV MLAEAQWRPE ESEDYETTIS SLTPETTYSI 360
  361 TVAAYTTKGD GARSKPKVVT TTGAVFAKNF RVAAAMKTSV LLSWEVPDSY KSAVPFKILY 420
  421 NGQSVEVDGH SMRKLIADLQ PNTEYSFVLM NRGSSAGGLQ HLVSIRTAPD LLPQKPLPAS 480
  481 AFIEDGRFSL SMPQVQDPSL VRWFYIVVVP IDRVGGNLLA PRWSTPEELE LDELLEAIEQ 540
  541 GEEKQRRRRR QAERLKPYVA AQVDELPETF TLGDKKNYRG FYNRPLSPDL SYQCFVLASL 600
  601 KEPMDQKRYA SSPYSDEIVV QVTPAQQQEE PEMLWVTGPV LAVILIILIV IAILLFKRKR 660
  661 THSPSSKDEQ SIGLKDSLLA HSSDPVEMRR LNYQTPGSSA PSCPNISSMR DHPPIPITDL 720
  721 ADNIERLKAN DGLKFSQEYE SIDPGQQFTW ENSNSEVNKP KNRYANVIAY DHSRVLLTSI 780
  781 DGVPGSDYIN ANYIDGYRKQ NAYIATQGPL PETMGDFWRM VWEQRTATVV MMTRLEEKSR 840
  841 VKCDQYWPAR GTETYGLIQV TLVDTVELAT YTMRTFALHK SGSSEKRELR QFQFMAWPDH 900
  901 GVPEYPTPIL AFLRRVKACN PLDAGPMVVH CSAGVGRTGC FIVIDAMLER MKHEKTVDIY 960
  961 GHVTCMRSQR NYMVQTEDQY VFIHEALLEA AMCGHTEVLA RNLYAHIQKL GQVPPGESVT1020
 1021 AMELEFKLLA NSKAHTSRFI SANLPCNKFK NRLVNIMPYE LTRVCLQPIR GVEGSDYINA1080
 1081 SFLDGYRQQK AYIATQGPLA ESTEDFWRML WEHNSTIIVM LTKLREMGRE KCHQYWPAER1140
 1141 SARYQYFVVD PMAEYNMPQY ILREFKVTDA RDGQSRTIRQ FQFTDWPEQG VPKTGEGFID1200
 1201 FIGQVHKTKE QFGQDGPITV HCSAGVGRTG VFITLSIVLE RMRYEGVVDM FQTVKTLRTQ1260
 1261 RPAMVQTEDQ YQLCYRAALE YLGSFDHYAT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle